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Treecomp - TreeComp is a utility to keep 2 directory trees and the files within the directories in sync. Download from this site!
Beyond Compare - Beyond Compare allows you to compare files and folders.
rsync - rsync is a file transfer program for Unix systems. rsync uses the "rsync algorithm" which provides a very fast method for bringing remote files into sync.
WinMerge - WinMerge is an open source differencing and merging tool for Windows.
Meld - What is Meld? Meld is a visual diff and merge tool targeted at developers.
Duplicati - Free backup software to store backups online with strong encryption. Works with FTP, SSH, WebDAV, OneDrive, Amazon S3, Google Drive and many others.