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BioEdit - Biological sequence alignment editor
UGENE - UGENE is free open-source cross-platform bioinformatics software
SnapGene Viewer - SnapGene offers the fastest and easiest way to plan, visualize, and document DNA cloning and PCR. You can easily annotate features and design primers.
DNADynamo - DNA analysis, cloning and sequencing software
Genophore - Genophore is an application for searching and designing proteins. It also provides a suite of bioinformatics utilities.
Clustal X - Multiple sequence alignment software.