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Mendeley - Easily organize your papers, read & annotate your PDFs, collaborate in private or open groups, and securely access your research from everywhere.
Zotero - Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share research.
PDF Stacks - PDF Stacks software program helps you organize and manage PDF files, papers and documents. Easily search and read your PDF documents on a PC and MAC
JabRef - Graphical Java application for managing bibtex (. bib) databases.JabRef · JabRef Help · JabRef | Blog · OpenOffice/LibreOffice .
EndNote - Accelerate Your Research. Save time, stay organized, collaborate with colleagues and get published with EndNote 20.
Qiqqa - Qiqqa is a free research and reference management software. It can be used in many organizational projects from the academic to the personal to the business endeavor. Read more about Qiqqa.