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MKV/AVI to MP4 - mkv/avi to mp4 converts mkv and avi files in h264 video to mp4 files without reencode the video stream. Subtitle will be embed as soft subtitle. Convert speed is fast as video is not reconverted.
MKVToolnix - MKVToolnix is a set of tools to create, alter and inspect Matroska files under Linux, other Unices...
HandBrake - HandBrake allows users to easily convert video files into a wide variety of different formats.
MKVCleaver - MKVcleaver is a GUI (Graphical User Interface) for mkvtoolnix, designed to extract data from MKV...
MY MP4BOX GUI - My MP4Box GUI is a Graphical User Interface for the well-known command line tool mp4box.
tsMuxeR - tsMuxeR update for 3D blu-ray (HD) DVD & Blu-ray authoring