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Blender - Blender is the open source, cross platform suite of tools for 3D creation.
WOW.js - Animate elements on-scroll to catch attention. Such Magic.
Cinema 4D - Cinema 4D is a 3D modeling, animation, motion graphics and rendering application.
Lax.js - Create beautiful & smooth animations when you scroll
Autodesk Maya - Maya is 3D computer animation software with powerful modeling, rendering, simulation, texturing, and animation tools for artists, modelers, and animators.
ScrollMagic - The jQuery plugin for magical scroll interactions.