Visuino - Visuino is a visual programming environment that lets you write programs from Arduino circuit boards.
MINIBLOQ - miniBloq is an open source graphical programming environment for Multiplo™, Arduino™, physical computing devices and robots.
PlatformIO - Next-generation IDE for IoT
XOD - A visual programming language for microcontrollers. Like code, but better.
Visual Micro - Arduino IDE for Visual Studio and Atmel Studio
Embrio - Embrio is an all-in-one open-source visual and real-time development environment built on HTML and JavaScript.