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BioEdit - Biological sequence alignment editor
Avogadro - Avogadro is a free, fantastically easy to use molecule editor.
SnapGene Viewer - SnapGene offers the fastest and easiest way to plan, visualize, and document DNA cloning and PCR. You can easily annotate features and design primers.
UCSF Chimera - UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular...
UGENE - UGENE is free open-source cross-platform bioinformatics software
Jmol - Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry...