Software Alternatives & Reviews

Tool for creating graphs with using graphical user interface?

Recommended and mentioned products

  1. Cytoscape Official Web Site

  2. TikZiT is a graphical tool for rapidly creating graphs and string diagrams using PGF/TikZ.

    I would recommend doing graphs in latex using tikz. There's a bunch of editors (some online too) that slow you to create them easily like this one:
  3. Gephi is an open-source software for visualizing and analyzing large networks graphs.

    I was a big fan of gephi. It hasn't seen active development for going on 4 years. However, if you just want to use it for learning interactively it should still be fine for your purposes.