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pymol - PyMOL is a powerful and comprehensive molecular visualization product for rendering and animating...
Jmol - Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry...
UCSF Chimera - UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular...
Avogadro - Avogadro is a free, fantastically easy to use molecule editor.
QuteMol - QuteMol is an open source (GPL), interactive, high quality molecular visualization system.
RasTop - RasTop is a molecular visualization software adapted from the program RasMol