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SciDaVis - SciDAVis is a free application for Scientific Data Analysis and Visualization.
GnuPlot - Gnuplot is a portable command-line driven interactive data and function plotting utility.
LabPlot - LabPlot is a KDE-application for interactive graphing and analysis of scientific data.
Dr. Geo - Dr. Geo, a software to design & manipulate interactive geometric sketches.
Giac/Xcas - Free computer algebra system
OriginLab - OriginLab is a data analysis tool that provide the engineers and scientist with the technical charts and system for 2D and 3D plotting and all kind of fitting including curve and peak fitting.