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pymol - PyMOL is a powerful and comprehensive molecular visualization product for rendering and animating...
Avogadro - Avogadro is a free, fantastically easy to use molecule editor.
UCSF Chimera - UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular...
BKchem - BKChem is a free (as in free software :o) chemical drawing program.
Rasmol - RasMol. 96 likes. RasMol is a computer program written for molecular graphics visualization intended and used mainly to depict and explore biological...
GPeriodic - GPeriodic is a periodic table application for Linux.