Based on our record, Graphviz should be more popular than Gephi. It has been mentiond 71 times since March 2021. We are tracking product recommendations and mentions on Reddit, HackerNews and some other platforms. They can help you identify which product is more popular and what people think of it.
Graphviz the tool for drawing class relationships. - Source: Reddit / 3 days ago
If you just need to display a graph, how about using graphviz? - Source: Reddit / 9 days ago
Graphviz (graphviz.org) is a nice, free general purpose graphics program that will do auto-layout . - Source: Reddit / about 2 months ago
Https://graphviz.org/ Or on the command line 'dot'. Programmatically create charts. - Source: Reddit / 2 months ago
I wrote a ruby script to map out the graph and fed it into graphviz to make the image. https://graphviz.org. - Source: Hacker News / 2 months ago
Tool: custom python scripts and Gephi. - Source: Reddit / about 1 month ago
Datasource : https://developer.riotgames.com/apis Tool used : https://gephi.org Network Algorythm : Force Atlas 2. - Source: Reddit / 3 months ago
Yeah the only way I've encountered uses Gephi to generate X and Y co-ordinates from your Excel source data. Since Tableau can't handle network graphs innately, it has to pretend it's plotting a dual-axis line and circle sheet. - Source: Reddit / 5 months ago
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... - Source: Reddit / 5 months ago
I am searching for a GUI library that is capable of Visualizing and manipulating nodes in a Graph, Something like gephi (a social network analysis tool). - Source: Reddit / 6 months ago
PlantUML - PlantUML is an open-source tool that uses simple textual descriptions to draw UML diagrams.
draw.io - Online diagramming application
yEd - yEd is a free desktop application to quickly create, import, edit, and automatically arrange diagrams. It runs on Windows, Mac OS X, and Unix/Linux.
Dia - Dia is a GTK+ based diagram creation program for GNU/Linux, MacOS X, Unix, and Windows, and is released under the GPL license.
Cytoscape - Cytoscape Official Web Site