Gephi VS Cytoscape

The following are not exactly what you have asked for. https://gephi.org/ This implements lots of graph visualization algorithms. https://strlen.com/treesheets/ Excel for tree data. - Source: Hacker News / about 2 months ago

🧑‍🎨 Enjoy some movie data art experience with Gephi and Runway. - Source: dev.to / 6 months ago

Maybe try exporting your data from spiderfoot and use a graph tool like Gephi to import your data to and have it generate a graph for you. Source: about 1 year ago

Tool: custom python scripts and Gephi. Source: about 1 year ago

Datasource : https://developer.riotgames.com/apis Tool used : https://gephi.org Network Algorythm : Force Atlas 2. Source: over 1 year ago

Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago

The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 11 months ago

Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago

Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago

I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago