Cytoscape
Gephi
Graphviz
KeyLines
UCINET
NodeXL
Pajek
SocNetV
ReGraph by Cambridge Intelligence
KeyLines
Gephi
Neo4j Bloom
D3.js
Linkurious
Graphviz
Maltego
With ReGraph’s simple data-driven API, it’s quick and easy to add graph visualizations to your React applications.
Ship custom, high-performance graph visualization to your users, wherever they are.
Cytoscape| Categories |
|
|---|---|
| Website | cytoscape.org |
| Pricing URL | - |
| Platforms | |
| Release Date | - |
ReGraph by Cambridge Intelligence| Categories |
|
|---|---|
| Website | cambridge-intelligence.com |
| Pricing URL | Official ReGraph by Cambridge Intelligence Pricing |
| Platforms | |
| Release Date | 2019-05-07 |
Based on our record, Cytoscape should be more popular than ReGraph by Cambridge Intelligence. It has been mentiond 11 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 11 months ago
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago
- regraph: https://cambridge-intelligence.com/regraph/. - Source: Hacker News / over 2 years ago
I am looking for a powerful open-source graph visualization library to use in an upcoming project. This article provides a lot of options, however, most of the open source libraries that I found were no longer being maintained and / or lacked the full set of features offered in a commercial product such as Keylines, ReGraph, or Ogma. Source: almost 3 years ago
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
KeyLines - The JavaScript toolkit for graph visualization
Graphviz - Graphviz is open source graph visualization software. It has several main graph layout programs.
Neo4j Bloom - Neo4j Bloom is a breakthrough graph visualization, exploration and communication tool.
UCINET - UCINET for Windows is a software package for the analysis of social network data.
D3.js - D3.js is a JavaScript library for manipulating documents based on data. D3 helps you bring data to life using HTML, SVG, and CSS.
