Cytoscape
Gephi
Graphviz
KeyLines
UCINET
NodeXL
Pajek
SocNetV
neo4j
ArangoDB
Redis
OrientDB
MongoDB
Azure Cosmos DB
Apache Cassandra
CouchBase
Cytoscape neo4jNo features have been listed yet.
Based on our record, neo4j should be more popular than Cytoscape. It has been mentiond 27 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 11 months ago
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago
Neo4j: An ACID-compliant graph database with a high-performance distributed architecture. Ideal for complex relationship and pattern analysis in domains like social networks. - Source: dev.to / about 2 months ago
The GenAI Stack came about through a collaboration between Docker, Neo4j, LangChain, and Ollama. The goal of the collaboration was to create a pre-built GenAI stack of best-in-class technologies that are well integrated, come with sample applications, and make it easy for developers to get up and running. The goal of the collaboration was to create a pre-built GenAI stack of best-in-class technologies that are... - Source: dev.to / 7 months ago
NoSQL is a term that we have become very familiar with in recent times and it is used to describe a set of databases that don't make use of SQL when writing & composing queries. There are loads of different types of NoSQL databases ranging from key-value databases like the Reddis to document-oriented databases like MongoDB and Firestore to graph databases like Neo4J to multi-paradigm databases like FaunaDB and... - Source: dev.to / 8 months ago
Recently I have taken an interest in big data. https://neo4j.com/ , https://cassandra.apache.org/ , https://clickhouse.com/, https://www.elastic.co/ - are all databases I have experience with. Neo4j and Cassandra only as a hobby, but Clickhouse I have used in production, and Elasticsearch I have used for some 7 years now. Source: 12 months ago
For organizations and their applications that are designed to detect fraud, like International Consortium of Investigative Journalists, or try to improve customer experience via personalization, as in the case of Tourism Media, a NoSQL graph database like Neo4j is a good match. In these kinds of use cases, the quantity of data we're dealing with is enormous, and the pattern we're searching for in the data is often... - Source: dev.to / about 1 year ago
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
ArangoDB - A distributed open-source database with a flexible data model for documents, graphs, and key-values.
Graphviz - Graphviz is open source graph visualization software. It has several main graph layout programs.
Redis - Redis is an open source in-memory data structure project implementing a distributed, in-memory key-value database with optional durability.
KeyLines - The JavaScript toolkit for graph visualization
OrientDB - OrientDB - The World's First Distributed Multi-Model NoSQL Database with a Graph Database Engine.
