Cytoscape VS Neo4j Bloom

Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago

The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 11 months ago

Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago

Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago

I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago

Click the Download button to download your credentials, we'll need these a little later on. After a couple of minutes, your instance will be ready to explore. You can click the Explore button to explore the graph with Neo4j Bloom, or query the graph using Cypher by clicking the Query tab. - Source: dev.to / over 1 year ago

On a daily basis, we use Neo4J Bloom to discover data and prepare our data storytellings. - Source: dev.to / over 1 year ago

See below Bloom visualization which shows applications, people, Kafka topic/consumers and producers, middlewares :. - Source: dev.to / over 1 year ago

I think you want Neo4j Bloom. https://neo4j.com/product/bloom/. Source: almost 2 years ago

Typically I’d use Neo4j and the Neo4j Bloom plug-in for visualization. Source: over 2 years ago