Based on our record, Cytoscape seems to be a lot more popular than Linkurious. While we know about 11 links to Cytoscape, we've tracked only 1 mention of Linkurious. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 11 months ago
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago
Https://linkurious.com | USA (East coast) | REMOTE | Full-time | $150k-180k We are a graph visualization company specializing in data investigations. Most of our customers are fighting financial crime. We are a 11 years old bootstrapped French startup, we created a subsidiary in Washington DC 2 year ago to better serve the US market. We are looking for employee #2 in the US (#44 overall). The open position is a... - Source: Hacker News / 3 months ago
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
Graphviz - Graphviz is open source graph visualization software. It has several main graph layout programs.
KeyLines - The JavaScript toolkit for graph visualization
Visallo - Visallo helps intelligence analysts, law enforcement detectives, and fraud investigators produce...
UCINET - UCINET for Windows is a software package for the analysis of social network data.
Maltego - Maltego is an open source intelligence and forensics application.