Cytoscape
Gephi
Graphviz
UCINET
NodeXL
Pajek
SocNetV
Centrifuge
KeyLines
Gephi
UMLGraph
yEd
Dia
draw.io
LucidChart
OmniGraffle
KeyLines is a powerful graph visualization SDK for JavaScript developers.
From law enforcement to fraud detection and cybersecurity, every day thousands of analysts rely on KeyLines-powered applications to turn their complex graph data into insight.
As an SDK, KeyLines lets you build applications specifically for your users, your data and the questions you need to answer.
It fits with any browser, device, server or database and comes with clear tutorials, demos and API documentation. Combined with our developer support, you’ll be uncovering network insight in no time.
Cytoscape| Categories |
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| Website | cytoscape.org |
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| Release Date | - |
KeyLines| Categories |
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| Website | cambridge-intelligence.com |
| Platforms | |
| Release Date | 2012-05-01 |
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Based on our record, Cytoscape seems to be a lot more popular than KeyLines. While we know about 11 links to Cytoscape, we've tracked only 1 mention of KeyLines. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 11 months ago
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago
I am looking for a powerful open-source graph visualization library to use in an upcoming project. This article provides a lot of options, however, most of the open source libraries that I found were no longer being maintained and / or lacked the full set of features offered in a commercial product such as Keylines, ReGraph, or Ogma. Source: almost 3 years ago
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
Graphviz - Graphviz is open source graph visualization software. It has several main graph layout programs.
UMLGraph - UMLGraph is a professional automated drawing tool that allows the designers the declarative specification and drawing of UML class and sequence diagram.
UCINET - UCINET for Windows is a software package for the analysis of social network data.
yEd - yEd is a free desktop application to quickly create, import, edit, and automatically arrange diagrams. It runs on Windows, Mac OS X, and Unix/Linux.
NodeXL - Home
