Cytoscape
Gephi
Graphviz
KeyLines
UCINET
NodeXL
Pajek
SocNetV
D3.js
Chart.js
Plotly
Highcharts
Google Charts
AnyChart
RAWGraphs
ZingChart
D3 allows you to bind arbitrary data to a Document Object Model (DOM), and then apply data-driven transformations to the document. For example, you can use D3 to generate an HTML table from an array of numbers. Or, use the same data to create an interactive SVG bar chart with smooth transitions and interaction.
D3 is not a monolithic framework that seeks to provide every conceivable feature. Instead, D3 solves the crux of the problem: efficient manipulation of documents based on data. This avoids proprietary representation and affords extraordinary flexibility, exposing the full capabilities of web standards such as HTML, SVG, and CSS. With minimal overhead, D3 is extremely fast, supporting large datasets and dynamic behaviors for interaction and animation. D3’s functional style allows code reuse through a diverse collection of official and community-developed modules.
Cytoscape| Categories |
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| Website | cytoscape.org |
| Details $ | - |
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Based on our record, D3.js seems to be a lot more popular than Cytoscape. While we know about 159 links to D3.js, we've tracked only 11 mentions of Cytoscape. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 11 months ago
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago
Yes this was done with a combination of GSAP Scrolltrigger https://gsap.com/docs/v3/Plugins/ScrollTrigger/ and https://d3js.org/. - Source: Hacker News / 3 days ago
d3 - very power visualization library enabling dynamic visualizations. docs. - Source: dev.to / 27 days ago
Yep, Evidence is doing good work. We were most directly inspired by VitePress; we spent months rewriting both D3’s docs (https://d3js.org) and Observable Plot’s docs (https://observablehq.com/plot) in VitePress, and absolutely loved the experience. But we wanted a tool focused on data apps, dashboards, reports — observability and business intelligence use cases rather than documentation. Compared to Evidence, I’d... - Source: Hacker News / 2 months ago
They are images so it could be any number of things, datawrapper, charts.js, d3.js to name a few options. Source: 4 months ago
I made this interactive visualization that attempts to show the real-time frequency and location of births around the world. A country’s annual births (i.e. The country’s population times its birthrate) were distributed across all of the populated locations in each country, weighted by the population distribution (i.e. More populated areas got a greater fraction of the births). Data Sources and... Source: 5 months ago
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
Chart.js - Easy, object oriented client side graphs for designers and developers.
Graphviz - Graphviz is open source graph visualization software. It has several main graph layout programs.
Plotly - Low-Code Data Apps
KeyLines - The JavaScript toolkit for graph visualization
Highcharts - A charting library written in pure JavaScript, offering an easy way of adding interactive charts to your web site or web application
