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Avogadro - Avogadro is a free, fantastically easy to use molecule editor.
BKchem - BKChem is a free (as in free software :o) chemical drawing program.
ImageJ - and Other Health Care
ChemDoodle - Chemical drawing and publishing software for desktop, web and mobile. Affordable and used by thousands of scientists around the world. Free trial available for immediate download.
TrueChem - TrueChem is software designed specifically to control and automate the management of chemistries, coatings, and wet processes.
ACD/ChemSketch - ACD/ChemSketch for personal and academic use brings the power of our structure drawing package to your home computer.